Index

A

add_missing_field() (in module bids.internal) append() (bids.Description method)

append_to_layout() (in module bids.internal) Assign() (in module bids.transformers_list)

B

Basic() (in module bids.transformers_list) bids (module), [1], [2], [3], [4], [5] bids.transformers_list (module)

bids.util (module) bids_path (bids.File attribute) BIDSModelVersion (bids.Model attribute)

C

camel_case() (in module bids.internal) check_required_entities() (bids.File method) ci_check() (bids.Schema static method) Concatenate() (in module bids.transformers_list) Constant() (in module bids.transformers_list) content (bids.Description attribute) (bids.Model attribute)

Copy() (in module bids.transformers_list) copy_to_derivative() (in module bids) create_data_dict() (in module bids.util) create_participants_tsv() (in module bids.util) create_readme() (in module bids.util) create_scans_tsv() (in module bids.util) create_sessions_tsv() (in module bids.util) create_unordered_list() (in module bids.internal)

D

dag_built (bids.Model attribute) default() (bids.Model method) Delete() (in module bids.transformers_list) derivatives_json() (in module bids) Description (bids.Model attribute) (class in bids)

Description() (bids.Description method) diagnostic() (in module bids) download() (in module bids.internal) download_ds() (in module bids.util) Drop_na() (in module bids.transformers_list)

E

Edges (bids.Model attribute) empty_model() (bids.Model static method) empty_node() (bids.Model static method) empty_transformations() (bids.Model static method) ends_with() (in module bids.internal)

entities (bids.File attribute) entity_order (bids.File attribute) entity_order() (bids.Schema method) entity_required (bids.File attribute) error_handling() (in module bids.internal) extension (bids.File attribute)

F

Factor() (in module bids.transformers_list) File (class in bids) file_utils() (in module bids.internal)

filename (bids.File attribute) Filter() (in module bids.transformers_list) find_suffix_group() (bids.Schema method) format_path() (in module bids.internal)

G

get_contrasts() (bids.Model method) get_definition() (bids.Schema method) get_design_matrix() (bids.Model method) get_dummy_contrasts() (bids.Model method) get_edge() (bids.Model method) get_edges_from_nodes() (bids.Model method) get_entity_order_from_schema() (bids.File method)

get_meta_list() (in module bids.internal) get_metadata() (in module bids.internal) get_modality_from_schema() (bids.File method) get_model() (bids.Model method) get_nodes() (bids.Model method) get_required_entities() (bids.File method) get_transformations() (bids.Model method) get_version() (in module bids.internal)

I

init() (in module bids) Input (bids.Model attribute) is_derivative (bids.Description attribute)

is_github_ci() (in module bids.internal) is_octave() (in module bids.internal) is_valid_fieldname() (in module bids.internal)

J

json_filename (bids.File attribute)

jsondecode() (in module bids.util) jsonencode() (in module bids.util)

K

keep_file_for_query() (in module bids.internal)

L

Label_identical_rows() (in module bids.transformers_list) layout() (in module bids) list_all_trial_types() (in module bids.internal)

list_suffix_groups() (bids.Schema method) load() (bids.Schema method) Logical() (in module bids.transformers_list)

M

match_structure_fields() (in module bids.internal) Mean() (in module bids.transformers_list) Merge_identical_rows() (in module bids.transformers_list) metadata (bids.File attribute) metadata_add() (bids.File method) metadata_append() (bids.File method)

metadata_files (bids.File attribute) metadata_remove() (bids.File method) metadata_update() (bids.File method) metadata_write() (bids.File method) mkdir() (in module bids.util) modality (bids.File attribute) Model (class in bids)

N

Name (bids.Model attribute)

Nodes (bids.Model attribute)

P

parse_filename() (in module bids.internal) path (bids.File attribute) pipeline (bids.Description attribute)

plot_diagnostic_table() (in module bids.internal) plot_events() (in module bids.util) prefix (bids.File attribute) Product() (in module bids.transformers_list)

Q

query() (in module bids)

R

regexify() (in module bids.internal) rename() (bids.File method) reorder_entities() (bids.File method) Replace() (in module bids.transformers_list) replace_placeholders() (in module bids.internal) report() (in module bids) required_entities_for_suffix_group() (bids.Schema method) return_datatypes_for_suffix() (bids.Schema method) return_entities() (bids.Schema method) return_entities_for_suffix_group() (bids.Schema method) return_entities_for_suffix_modality() (bids.Schema method) return_entity_key() (bids.Schema method)

return_entity_name() (bids.Schema method) return_file_index() (in module bids.internal) return_file_info() (in module bids.internal) return_modalities() (bids.Schema method) return_modality_extensions_regex() (bids.Schema method) return_modality_groups() (bids.Schema method) return_modality_regex() (bids.Schema method) return_modality_suffixes_regex() (bids.Schema method) return_subject_index() (in module bids.internal) return_suffix_groups_for_datatype() (bids.Schema method) return_suffixes() (bids.Schema method) root_dir() (in module bids.internal)

S

Scale() (in module bids.transformers_list) schema (bids.File attribute) Schema (class in bids) Schema() (bids.Schema method) Select() (in module bids.transformers_list) set_derivative() (bids.Description method)

set_field() (bids.Description method) Split() (in module bids.transformers_list) starts_with() (in module bids.internal) Std() (in module bids.transformers_list) suffix (bids.File attribute) Sum() (in module bids.transformers_list)

T

Threshold() (in module bids.transformers_list) tolerant (bids.Model attribute)

transformers() (in module bids) tsvread() (in module bids.util) tsvwrite() (in module bids.util)

U

update() (bids.File method) (bids.Model method)

url() (in module bids.internal) use_schema() (bids.File method)

V

validate() (bids.Model method) (in module bids)

validate_edges() (bids.Model method) validate_entities() (bids.File method) verbose (bids.Model attribute)

W

write() (bids.Description method) (bids.Model method)